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FALL 2003
Volume 4
Number 3

The Ag Magazine is published by the University of Kentucky College of Agriculture.
© 2003 University of Kentucky College of Agriculture

Dean and Director:
M. Scott Smith

Assistant Dean for
Agricultural Communications and Information Technology:
Carla G. Craycraft

Director for Advancement:
William M. Sheets

Editor:
Martha Jackson

Designer:
Linda Millercox

Web Version:
Shamick Gaworski

Magazine Contact for
Ag Alumni and Development:
Grace Gorrell

Photographers:
Matt Barton
Stephen Patton

Additional Photo Credit:
French countryside, pp. 2-3 & 4-5, student with headphones, p. 3, French market, p. 5, Steve Isaacs; Baby, p. 10, Comstock.com; Peregrine falcon, pp. 18, 23, Matthew Dzialak; High-vigor seedlings, p. 24, Bob Geneve; Honeybees, p. 25, Tom Webster.

Send comments and letters to:

The Ag Magazine Editor
Agricultural Communications
131 Scovell Hall
University of Kentucky
Lexington, Kentucky 40546-0064
E-mail: magazine@
uky.edu
Fax: 859-257-1512

Mention or display of a trademark, proprietary product, or firm does not constitute an endorsement and does not imply approval to the exclusion of other suitable products or firms.

The UK College of Agriculture is an Equal Opportunity Organization.

Printed on recycled paper with soybean oil-based ink.



Fall 2003 magazine


Letter from the Dean ...... 1

The French Connection - La Connection Francaise ...... 2

Rx for Smal Town Economic Health ...... 6

The Case of the Missing Gene:
Plant Pathologist Helps March of Dimes with Research
...... 10

Listening to the Voices of the Rural Poor ...... 16

2002 Research Annual Report ...... 18

Dean's Letter
Human Environmental Sciences and the College

A merger of the College of Human Environmental Sciences and the College of Agriculture was recently enacted by the University of Kentucky Board of Trustees—truly a momentous decision for all those affiliated with these two great colleges. The reorganization was the culmination of many months of analysis, planning, and spirited debate on the future of human environmental sciences at UK.

The action creates a new School of Human Environmental Sciences within the College of Agriculture that will include all three existing departments: Nutrition and Food Science, Family Studies, and Merchandising, Apparel, and Textiles.

This structure was a response to strong internal and external support for sustaining a unified, comprehensive focus in all areas of family and consumer science.

During discussions of the merger, the University's Board of Trustees and others asked many questions about the College of Agriculture's plans to accommodate the broader mission resulting from this reorganization. As a result, the College is now firmly committed to review of its strategic plan and consideration of a possible name change later this year.

There are many excellent reasons for the new School of Human Environmental Sciences to join the College of Agriculture. Of course, the heritage of HES and the College dates back to the early 1900s. Beginning in 1941, for about 25 years, we were known as the College of Agriculture and Home Economics.

The two colleges share innumerable connections through our alumni, practicing professionals, and constituents. Probably most important to the future success of the merger is that we remain united in dedication to the land grant philosophy of integrated excellence in research, instruction, and extension.

We extend a sincere welcome to those of you associated with the School of Human Environmental Sciences and look forward to working with you for families and consumers in Kentucky and beyond.


—M. Scott Smith
Dean, College of Agriculture

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The French Connection - La Connection Francaise

by Haven Miller and Laura Skillman

La Connection Francaise (The French Connection)
Exchange Program Benefits Ag Students
By Randy Weckman

“How do you keep them down on the farm after they’ve seen Paree?” was a popular World War I ditty—a piece of social commentary about the potential for American farm boys to see their own lives as rather dull when reflected in the luminescence of the City of Lights.

Yet, 80-some years later, the question might be asked “how can the great-grandsons and great-granddaughters of those doughboys be truly
successful in agriculture if they don’t know about the rest of the world?
Voila! A French study trip that focuses on agriculture.

For the past 11 years, the College of Agriculture has sponsored study trips to Dijon, France, for agricultural students. But the trip is no paper-thin excuse to see the Mona Lisa in the Louvre, the Eiffel Tower, or even the Left Bank. The trip is every bit as much an eye opener about agriculture as Paris’ bright lights were about life in general for the doughboys of World War I.

Steve Riggins, UK agricultural economist, as chair of the 13-state Southern Region Marketing Committee, mused in 1991 with fellow committee member Charles Curtis, an agricultural economist representing Clemson University, that while the land-grant system had a tremendous history of working successfully with Third World countries, not much land-grant activity had occurred with countries whose agricultural system was equivalent to—and in some areas even better than—ours. The two agricultural economists decided then and there to investigate the possibility of putting together a package that would remedy the situation.

“Charles had a contact with an agricultural technical school just outside of Dijon, France, whom he believed might be interested in some sort of exchange. Pascal Durand, a world renowned viticulturist (grape producer) with ENESAD (Etablissement National D’Enseignement Superieur Agronomique de Dijon), was soon on-board with the plan,” Riggins said.

The timing was right. Durand advised Riggins and Curtis that the French government was seeking to streamline and improve agricultural education. ENESAD, the technical agricultural school funded by the French National Ministry of Agriculture, was to be associated with the University of Burgundy in Dijon, a traditionally liberal arts school, funded by the National Ministry of Education. An agricultural experiment station (INRA—Institut National de la Recherche Agronomique), close by and also funded by the Ministry of Agriculture, was slated to be brought into the fold. In essence, the association of the three institutions emulated the land-grant system in the United States.
Durand believed that the cultural and technical exchange could enhance agricultural education in France; Riggins believed that the exchange could help Kentucky’s students become more aware of different agricultural systems in the world.

“Pascal was enthusiastic, and by October of 1991, an agreement between the University of Kentucky, the University of Nebraska, and Clemson University had been forged with the French institutions,” Riggins said.

Parlez Vous

After all the bureaucratic paperwork was signed in October 1991, the first exchange took place the following October. The first year’s adventure in some measure was a cultural tour of agricultural production in the Burgundy region with tours of Paris agribusiness firms, which are an hour and a half northwest of Dijon. While that first exchange was just over a week long, it nonetheless was a resounding success, with students reporting that they had a greater appreciation of the world’s agricultural infrastructure. One of the drawbacks, however, was the U.S. students’ limited knowledge of the French language and culture.

So, two years after the first “class” went to France, Riggins worked with fellow agricultural economist Mike Reed, whose area was international trade, to help flesh out the exchange to enhance the students’ learning.

“Mike Reed secured a grant from the U.S. Department of Education to help pre-condition the students for the trip. With that funding, we offered a three-hour class that met throughout the semester before the student exchange to prepare our students to gain the most they could from the trip,” Riggins said.

“The funds allowed us to hire a UK political science doctoral student—a native of Breton, France—to teach a crash course in the French language. Other experts on French history, politics, and agriculture rounded off the semester-long class,” Riggins said.
That year, the trip would be extended to several weeks for all the students. Later, the French trip would allow students to opt for a two-week tour or a four-week stint (sometimes longer, based on the student’s desire) that included working in some facet of French agriculture.

In the meantime, to make the trip a true educational exchange, Durand enlisted French agricultural students to come to Kentucky to study U.S. agriculture. The French students’ tour was for six to seven weeks, since many of them use their experience as the basis for their “memoir” paper, a term project roughly equivalent to an undergraduate thesis that is required of them for graduation.

From Paree (France)
to Paris (Kentucky)

In 2003, 15 students from France studied for the summer at the University of Kentucky. Projects ranged from agronomy to agricultural engineering to plant pathology to animal sciences.

Florent Voiry, one of those 15 students from ENESAD, worked on a special project under the tutelage of agricultural engineer Scott Shearer. Voiry’s project was to design, construct, and test a forage yield monitor for a GPS system. After two weeks on campus, Voiry completed the design phase and began constructing the device that “reads” forage yields in front of the tractor. He worked on it at the College’s farm shop.

Voiry, who grew up on a farm producing beef, small grains, and row crops near Nancy in the Burgundy region, will use his project as his memoir project, provided that the test of the device goes well.

“I am excited to be able to work with Dr. Shearer and in such a well equipped shop. I love ag mechanization and plan to work on a master’s degree after graduating from ENESAD,” he said.

Fellow Frenchman Jerome Julien is using his summer at UK to study Global Positioning Systems and Geographic Information Systems with UK agronomist Tom Mueller.
Twenty-seven-year-old Julien, from a village of about 100 people in the south of France, had spent several years as a teacher’s assistant prior to enrolling at ENESAD. He plans to graduate with a specialization in computer engineering and agronomy.

“This is a fine opportunity for me to study GIS/GPS. I will use what I learn here as part of my memoir paper when I am ready to graduate,” he said.

From Versailles (Vur-Sales)
to Versailles (Ver-Sigh)

For Kentucky students, the two-week tour includes a whirlwind inspection of agricultural production sites in the Burgundy region as well as major cultural sites such as the Louvre (most of the students have a bon ami take pictures of themselves next to the Mona Lisa). The agricultural production sites include typical farms (an average farm size in France is about 110 acres), as well as farms that produce exotic (for U.S. students) products, such as wines, truffles, and free range, branded (Bresse) chickens. They also see sites carrying out intensive small grain production (high seeding rates per acre with high fertility and pesticide use compared to U.S. production).

“We saw so much that I am still thinking about all that I saw, even though I’ve been back from the French trip for three weeks,” Shawn Burger, a junior in agricultural communications, said this summer. “I am still amazed at how different cultures lead to such wide differences in agriculture.” A native of Burgin, Burger plans a career in agricultural marketing when he graduates. As a result of the French trip, Burger is considering adding an international dimension to his career plans.

While Burger opted for the two-week tour, Renee Saunier—an agricultural economics and French major from Lexington who graduated in May 2003—stayed in France all summer in 2002, working on a research project about marketing Zinfandel wines to the French. (Zinfandels are known as California wines, although the grapes from which they are made are Croatian in origin. French consumers have little exposure to Zinfandel wines, partly because they are not routinely available.)

Saunier's project was to interview winery owners about their retailing of Zinfandel wines. Of the seven wineries she visited, she found that only two sold Zinfandels—and neither sold much of them.

“The trip was a great experience that opened up many doors for me to pursue a career in wine marketing,” she said.

As a result of her experiences in France, Saunier will be returning in October to teach English as a second language to French elementary schoolers and to take graduate courses in wine marketing at the University of Burgundy.

France: Where Gastronomy Drives the Agricultural Economy

France is well known for its appreciation of—maybe even an obsession with—fine food and wine. But what is not probably so well known is how this passion for food works its way back to the farm. And it does so, decidedly.

“Agriculture is a consumer-driven industry, and what we might call peculiarities are highly relevant to producers,” said Steve Isaacs, agricultural economist who served as student advisor to the Kentucky students who traveled to France in 2002. “For example, a national (French) law created the Appellation of Origin certificate, which allows a consumer to find out exactly when and where the food offered for sale at the supermarket came from.” That is, the cheese or the chicken you buy can be traced directly back to the farm from whence it came.

French consumers value having a diversity of products available to them. And whereas American consumers seek consistency and quality, the French appreciate the fact that there may be a difference across brands and maybe even within brands over time. It is expected—just as there are better years for certain wines—that food products will differ from time to time.

And while U.S. food is produced by an increasingly smaller number of increasingly larger farms, French food is produced by an amazingly high number of small farms. Because French consumers like the diversity of products and the assurances that they are of a certain origin, they are willing to pay premiums for that privilege through higher retail prices and through subsidies to French farmers. (France, as a member of the European Union, tentatively agreed in June 2003 to phase out farm subsidies within five years.)

France is the second largest agricultural producing country in the world, just after the United States. And within the European community, France is the major agricultural producing country. Much of its production is being exported to EU countries, although about 9 percent of its agricultural exports—mostly wine and cheeses—are U.S. bound. Thus, any change in France’s agricultural economy will affect U.S. farmers as well.

In addition to the French trip, the College of Agriculture sponsors a three-week tour of Chinese agriculture for students in association with Shandong University in eastern China. A variety of internships also are available to students interested in international agriculture.


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Rx for Small Town Economic Health

By Randy Weckman

Health care is changing quickly for the better in rural Kentucky. For a long time the standard of care for many rural Kentuckians has been to travel long distances for even relatively minor procedures. That's because no local facility was available to perform them. While traveling for health care was inconvenient, it also represented lost opportunities for economic development.

Eric Scorsone in the Department of Agricultural Economics is helping to change all that. His research involves working with local leaders and health care providers to assess the type of medical facilities that can be economically viable for a community. In many cases so far— he's completed more than 30 analyses for communities throughout Kentucky—improving local medical facilities makes sense in both convenience and in keeping money at home.

Scorsone's work is part of the Kentucky Rural Health Works Program, which is a collaborative effort of the UK College of Agriculture, the UK Center of Excellence for Rural Health, and the Kentucky State Office of Rural Health. These groups work together to assist rural Kentucky communities in promoting and supporting rural economic development and local health care networks.

“Too often in the past, rural leaders didn't know if improving medical care facilities would be economically feasible,” Scorsone said. “They didn't have information about the health care status of their community to make wise decisions. Many communities simply avoided making decisions to improve local facilities,” he said.

Scorsone said that a local health care system is vital to rural economies because rural health care is often second only to the local school system in the number of people it employs and may account for as much as 20 percent of the county's jobs. He also noted that during the last two decades, health care's share of industry earnings had doubled to about 12.3 percent. During the same time, medical transfer payments (from government agencies for health care) tripled in the amount they contribute to rural Kentucky's personal income.

Individualized Prescriptions
When Scorsone and the team do a community health care audit, they review the market area for the proposed facility. Then, they make assessments of how many types of procedures would likely be performed each year given the demographics. They present that information to the requesting leaders or health care facility.

For example, the Monroe County Hospital asked for help in ascertaining whether a market exists for dialysis. Monroe County has one of the highest rates of diabetes in the nation, and kidney disease is one of the outcomes of uncontrolled diabetes. Hospital officials surmised that the county might have enough patients who would need kidney dialysis to pay for establishing a dialysis clinic.

As soon as they were asked to assess the economics of establishing the clinic, the Rural Health Works Program team reviewed demographic data concerning the expanded market geography and estimated that between 1,700 and 2,300 dialysis visits could be expected each year.

“The team acted as a consultant, providing data for local leaders to use in making decisions. Obviously, we cannot know whether it is economically feasible, based on facility costs and the like. We can, however, predict with some measure of certainty the level of need for the service in the community,” Scorsone said.

Monroe County leaders have put the dialysis project on their to-do list.
Scorsone noted that not all of the ideas for expansion of health care facilities are economically worthwhile.

“The Cumberland County Hospital wanted to expand the number of beds at the facility. Our market analysis suggested that expansion probably wasn't a good idea economically. And that knowledge helped the hospital avoid a costly overexpansion that wouldn't pay for itself,” he said.

Not having a robust health system means lost economic opportunities for the community. It also means that health care is less accessible because of the inconvenience of driving an hour or two for routine medical procedures. If local conditions warrant additional health care development, communities can make life easier for citizens and give their local economy a shot in the arm, Scorsone said.

“We've used the Rural Health Works Program in a variety of settings,” said Judy Jones, director of the UK Center of Excellence for Rural Health in Hazard. “The benefit is that it shows community leaders just how much health services contribute to the local economy. Rural community leaders are always looking for ways to improve their economies. And unlike manufacturing, health care is a clean industry, and it encourages education,” she said.


Marcum & Wallace Memorial Hospital Makes Informed Plans

The Marcum & Wallace Memorial Hospital in Irvine (Estill County) is a small but progressive community hospital with 25 licensed beds. It was established in 1949 as a result of local leaders seeing a need for a hospital in the area. The hospital needed help making a decision about whether it would be economically feasible to develop outpatient services. Its leaders asked Scorsone for help.

Scorsone first looked at the market area the hospital now serves, which is made up of portions of nine counties, including Estill, Powell, Wolfe, Lee, Jackson, Owsley, Breathitt, Clark, and Madison. The number of people residing in the market area was nearly 46,000.

Based on the demographics, the team estimated that the outpatient clinic services unit likely could perform between 1,450 and 1,700 procedures each year (between 350 and 410 endoscopic examinations, between 175 and 205 orthopedic procedures, and between 146 and 171 ophthalmological procedures, among others). The economic returns to the community for such a facility could be expected to be several hundred thousand dollars and create a number of jobs, too.

According to Susan Starling, chief administrative officer at Marcum & Wallace, “Eric helped us strategically plan the direction we were going. His work will help us make important decisions about our hospital. Right now, we are making upgrades to our current facilities.”

Next, hospital leaders will evaluate whether to add the clinic. Their decision will be based on the facts and figures Scorsone's team provided. "His information has been really valuable in giving us direction for the future. We have it in the plan, and the board will use it to chart our future," said Starling.

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The Case of the Missing Gene:
Plant Pathologist Helps March of Diemes with Research

By Randy Weckman

When you think about it, it's not such a big intellectual leap from studying genes in a fungus that infects rice and certain other grass family members to investigating
mutations that cause birth defects in babies. You need only to understand that genes work pretty much the same way in all organisms, including fungi, humans, cats, dogs, and donkeys, among others.

That's why the March of Dimes organization was interested in funding the research of Mark Farman in the Department of Plant Pathology. That research is on mutations in a fungus that causes a disease in rice called rice blast. Rice and fungi wouldn't seem at first blush to be in the March of Dimes’ field of interest, but Farman's shining of a big, bright light on the process of gene loss in the fungus, the March of Dimes believed, might well help medical researchers understand the same phenomenon that causes all manner of birth defects in babies. And that's a worthwhile goal as far as the March of Dimes is concerned, because preventing birth defects has been its raison d'etre since it was established in the 1930s.


Genetics 101

The research of Farman, a northwest-Londoner by birth, is at the below-tiny, below-microscopic level; he studies the lilliputian world of DNA (genetic material) of the rice blast fungus Magnaporthe grisea. This rice fungus is important to world rice production because it can waste a rice crop posthaste. And the fungus also can cause severe devastation in certain susceptible turf grasses such as annual ryegrass, perennial ryegrass, and St. Augustine grass, to name a few.

But this fungus has a peculiarity that makes Farman take an interest in it. Its quirk is that when one particular strain of the fungus is crossed with certain other strains, a gene that controls pigment in the fungus is lost in about 25 percent of the progeny. Because that gene causes color, progeny without the gene are pale and wan, easily recognized. Sometimes, however, when strains that are known to be genetically unstable are crossed with other strains, there is no gene loss. Weird, huh?

Furthermore, those 25 percent that lack pigmentation can't manufacture an enzyme (tetrahydroxynaphthalene reductase) that allows the fungus to synthesize its own melanin.
Normally, melanin allows the fungus to be stiff enough to penetrate rice leaves, enabling it to establish an infection. Because 25 percent of the strains don't have the melanin mechanism that allows infection to occur, the genetic mutant seems to be self-limiting. Progeny with the gene loss can no longer cause disease; nonetheless, the mutation appears with regularity as a new (de novo, as geneticists call it) defect.

And while 25 percent may seem an almost magical number to those who've had an elementary course in Mendelian genetics (Aha! A simple recessive trait will be expressed when two recessive genes come together after fertilization, and that will occur in 25 percent of progeny), as a fungal geneticist, Farman knew that the phenomenon he saw and recorded was truly due to gene loss. That's because the rice blast fungus has only one set of chromosomes, so the recessive trait would be expressed 100 percent of the time.
Farman compared the genetic material of the mutants with parent fungi and found that the mutants, plain and simple, had a big hole where a gene that codes for melanin synthesis should be. It had been deleted sometime during meiosis. Meiosis is the process by which a cell's double set of chromosomes becomes a single set in the sperm or egg. Offspring from the fertilized egg then receive one set of chromosomes from each parent. See the sidebar on meiosis on page 15 if you need a quick refresher course in biology. If the oddity was caused instead by the expression of a non-functional gene, once reproduction occurred there would be a copy of that gene.


The Human Connection

Why is chromosome loss more than a novelty, a sideshow for a fungus that causes disease in rice? Does this phenomenon have implications for science beyond allowing researchers to understand and maybe control a disease in rice and certain turf grasses?
You betcha.

De novo gene losses—those in which the gene loss occurs in the first generation and have not been inherited—also are relatively common in plants and animals. Often, the results are catastrophic. Wolf-Hirschhorn syndrome in humans, for example, is caused by the deletion of genes on the human chromosome 4; the syndrome is manifested in growth and mental retardation, incomplete brain development, and other defects. Several congenital heart defects are caused by genetic aberrations on chromosome 22. The Angelman syndrome—sometimes called the happy puppet syndrome because children born with it have severe mental retardation, inappropriate laughter, lack of speech, and herky, jerky gait—is thought to be caused by genetic errors in the 15th chromosome.

Because Farman’s rice fungus is rather predictable (at least in the sense that genes are deleted with high frequency), it is a good organism to study to find out exactly why—and how—gene deletion occurs. If Farman's research in the rice fungus, which is truly basic science, can answer these puzzling questions, other researchers may be able to discover ways to prevent a variety of birth defects in babies.

Farman has shown that fungal strains possessing an unstable pigment gene have small pieces of DNA on each side of the gene that are virtually identical. Such repeats can cause problems for the fungal cells, especially if they are close to one another. This is because the enzymes that replicate the chromosomes can “jump” between repeats, failing to copy any of the DNA in between. During normal meiosis, these jumps are prevented because a matching chromosome from the other parent pairs tightly with the unstable chromosome, holding the repeats well apart.

Farman proposes that the frequent de novo mutations occur when the chromosome region containing the pigment gene is organized differently in each of the parents. This prevents the partners that are pairing from aligning correctly, which will allow the repeats surrounding the unstable pigment gene to pair with each other. If the cell then performs what it believes to be a normal meiotic exchange of DNA strands in this self-paired loop, the pigment gene will be released from the chromosome and degraded.

Real-World Problem Solving

But a simple association does not a theory prove.
That's why researchers always work from a theoretical rationale, which seeks to explain how two observations are related. Researchers develop their rationale and then try to disprove it through crucial research.

In a series of experiments, Farman made the crosses between the unstable strain and stable strains and found that pigment gene deletions occurred whenever chromosome pairing was predicted to be disrupted.

“Furthermore, deletions occurred only in the chromosome that possessed the repeats on each side of the gene; the sites of deletion were right within the repeated gene,” Farman said. “Even more telling, however, was the finding that the unstable chromosome region rarely suffered deletion in crosses where it was able to pair with an identical chromosome,” he said.

Farman thus was able to specify that the pigment deficiency is caused by gene loss and was able to predict with precision the circumstances under which losses occurred when parents have chromosomes with different organizational patterns in a region rich in repeated DNA.

How does this help manage the disease in rice and turf grasses?
According to plant pathologist Paul Vincelli, who collaborated with Farman on discovering a strain of Magnaporthe grisea fungus that causes devastating disease on perennial ryegrass, many fungicides lose their punch after a short time because the fungus adapts genetically so that it can survive—and sometimes thrive—in the presence of the fungicide.
“Understanding the basic molecular aspects of genetic variation in various fungal strains can help other scientists develop control agents that will remain effective against a constantly mutating fungal population,” Vincelli said.

Did the March of Dimes Get Its Money’s Worth?

Absolutely!
Because the genetics of de novo chromosomal abnormalities isn't easy to study in humans, Farman's research on a fungus may provide important information on understanding how mutations occur. They appear not to be random events, but rather have a very strong, deterministic genetic basis. If scientists can understand the mechanism for such mutations, it may be possible to predict when such birth defects might occur, perhaps even develop methods to avoid them altogether if there is a strong probability of their occurrence.


The ABCs of Meiosis

If you think Watson refers to Sherlock Holmes’ sidekick and Crick refers to the pain in the neck you have from reading Sir Arthur Conan Doyle's classics about Sherlock’s adventures, you might need a tutorial on meiosis—pro-nounced “my - oh - sis.” Meiosis occurs when reproductive cells (eggs or sperm) are produced. Suffice it to say, these days biology is more than carving up really dead animals.

Watson and Crick were the young scientists at Cambridge University in England (Watson was American; Crick was English) who in 1953 described that the genetic molecule (DNA) is made up of two chains of chemicals (sugar phosphates) arranged around a central axis much like a ladder—except that the ladder is twisted into what's called a double helix. The ladder—and each species has a certain number of discrete ladders in every cell—is made up of chromosomes. (Humans have 46 chromosomes; goldfish have 94; gorillas, 48; and cattle, 60).

Continuing the ladder analogy, think of the rungs. Each rung is formed from the weak bonding of two of four basic molecules-—adenine, cytosine, thymine, and guanine. Up and down the ladder are several rungs that in a row make up genes. And between rungs (genes)—and this is important when understanding Farman's work—are pieces of DNA that apparently have little importance but occupy spaces between genes. It is in these spaces (repeats) that Farman believes trouble begins.

De Novo Chromosomal Abnormalities

De novo chromosomal aberrations in humans are frequent. In fact, all mutations—even if they are inherited—started out as de novo aberrations. Syndromes in humans that are thought to be the outcome of chromosomal errors include some well-known ones, such as Down syndrome and dwarfism. Down syndrome occurs in one out of every 1,250 births to mothers in their 20s and in one in 30 births for women who are in their mid-40s. It is associated with a chromosomal defect on the 21st chromosome. Down syndrome (like several other birth defects such as Patau syndrome, Turner syndrome, and Kleinfelter syndrome) is caused by an incomplete separation of chromosome pairs during meiosis. Each of the syndromes shows three chromosomes (trisomy) when there normally would be only two. Further, many of the de novo chromosomal abnormalities are unnoticed because the fetus dies before it is detected as a pregnancy.

And while many genetic abnormalities are catastrophic, some are a real benefit, especially in agriculture.

Genetic aberrations in plants can lead to quite convenient foods. Seedless grapes and watermelon are two common foods that are the result of errors during meiosis that lead to the progeny having three sets of chromosomes instead of two. In the trade such plants are called triploid. The fact that no seeds are produced means that all new plants must be propagated using unconventional techniques. In grapes, new plants are created by coaxing cuttings from a mother plant to set roots and begin anew. In the case of watermelon, seeded varieties are chemically treated so that the resulting plants have four sets of chromosomes. Seeds from those plants are then crossed with a conventional two-set watermelon, which results in the triploid progeny that produces seedless fruit when pollinated with a two-sets-of-chromosomes variety.

In meiosis, a cell’s double set of chromosomes becomes a single set in the sperm or egg, so that after fertilization occurs, the egg has one set of chromosomes from each parent. Here’s how it works (each chromosome as drawn is representative of a set of chromosomes):
1. Most cells in our bodies contain two copies of each chromosome, one that came from “Mom” (blue) and the other from “Dad” (red).
2. Just before meiosis, chromosomes copy themselves, resulting in “sister” strands of DNA joined at the centromere.
3. Early in meiosis, each replicated chromosome pairs up with its partner in the middle of the cell so that the four DNA strands are aligned with one another. Enzymes cut the DNA strands at random points along the chromosomes. Another set of enzymes then joins the free ends to one of the strands on the partner chromosome, resulting in a crossover. In normal meiosis, the crossovers occur at exactly the same point on the two DNA strands, so no genetic information is lost.
4. After crossing over is complete, the chromosome pairs are pulled apart by cellular “motors” that latch onto their centromeres.
5. Finally, the sister strands are separated, resulting in four chromosome sets that are each packaged into a single sperm or egg cell, which are called haploid cells because they contain just one copy of each chromosome.

Farman proposes that frequent de novo mutations occur when the chromosome region containing the pigment gene doesn’t align correctly with its pairing partner during meiosis. This would allow repeats (of DNA) surrounding the unstable pigment locus to pair with each other.

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Listening to the Voices of the Rural Poor
By Randy Weckman

Poor people. Children in poverty. The images conjured up by each of these phrases today most often have an urban, housing project complexion. Yet, much of the poverty in the United States is not urban, inner city poverty, but rural, wide-open-spaces poverty and small town poverty. Regardless of locale, poverty constitutes human potential unfulfilled.

The Personal Responsibility and Work Opportunity Act of 1996, commonly dubbed “welfare reform,” made sweeping changes in the federal government’s role in supporting low-income families. It ended cash assistance as an entitlement, imposed time limits and work requirements on poor people, and gave states greater domain in welfare policy. And as the name implies, it put the onus on poor families to figure out how to end their dependence on welfare.

Nearly all discussions leading to welfare reform centered on the urban poor. And while the outcome of being poor in an urban situation and a rural situation may be similar, the opportunities for bootstrapping oneself out of poverty may be quite different.
How are rural families with young children dealing with the “end of welfare as we know it,” a common descriptor of the legislation? According to a study by Tricia Dyk, a sociologist in the Department of Community and Leadership Development, they’re having problems that are uniquely rural in nature.

“In our study we asked poor Kentucky mothers to tell us in their own words what their lives are like after welfare reform,” said Dyk.

“Because they are telling us their story, we can understand the strategies they use in dealing with poverty every day,” she said.

“The mothers we’ve interviewed aren’t ‘welfare queens’ of popular myth. Two-thirds of them or their husbands had worked sometime during the last year. Nonetheless, the barriers for bootstrapping themselves permanently out of poverty are formidable,” Dyk said.

These families don’t want to continue “drawing a check,” as the saying goes, but they face difficult challenges not only in finding a job but in being able to retain it because of many things most of us take for granted, she said.

“Jobs in rural areas are scarce, and when a job is available, it is twice as likely as an urban job to pay minimum wage and have no benefits,” Dyk said. It may be very difficult if not impossible to sustain a family on minimum wages, especially when benefits are meager, she said.

The lack of reliable transportation is a major barrier for many of these people, she said.
“Because getting to a job in a rural area usually requires some travel, you may have a hard time keeping a job if you don't have a car or your car is undependable. Some moms are coping by having a member of an extended family help out with transportation to and from a job,” Dyk said.

Child care is another major obstacle for many. Child care is expensive in urban areas, too, but at least it is more readily available. In rural areas, reliable child care may be quite distant from one’s home, she said.

“Again, the extended family often helps out with child care while parents work,” Dyk said.
So, okay, if jobs in rural areas are scarce and barriers to working substantial, why don't the rural poor move to urban areas where jobs, public transportation, and child care are more available?

“Historically, many rural poor have migrated to the cities,” Dyk said. “The low-income moms we interviewed, in addition to being very dependent on extended family members to keep their own families intact, often have responsibilities to other family members that preclude them from even thinking about leaving the rural area for the city,” she said.
Oddly, living in poverty hadn’t particularly embittered the low-income moms.
“These people are resilient and resourceful in their own ways in dealing with the unexpectedness of their lives. They tend to be very good at living poor,” Dyk said.
Take Laurie, a 22-year-old mother of two, who said one technique she uses to get through to the end of the month is pawning.

“I pawn stuff all the time. I pawned my ring the other day to buy diapers. I pawn things telling myself I'll get them back. But then I never do.”

Laurie (not her real name) takes care of two small children while her husband works any odd jobs he can procure. Laurie believes she is ineligible for child care assistance because she and her husband live together. Because money is so tight, she relies on washing clothes in the bathtub rather than spending money at the laundry.

By knowing just how families like Laurie’s are coping, we can better anticipate the needs our rural poor have in getting out of poverty and staying there, Dyk said. Just because they are no longer on welfare rolls doesn't mean their income is sufficient to move beyond poverty, she said.


About Kentucky Children Living in Poverty
Child poverty in Kentucky is substantial, with some locales having higher rates of child poverty than others. Poverty rates for children (defined as those under age 18) range from 6.8 percent in Boone County to more than 56 percent in Owsley County. Twenty-five Kentucky counties have more than one in three children living in poverty; all of these are rural counties. Overall, Kentucky ranked seventh in the nation in 1999 in the number of children living in poverty—more than 200,000.

Owsley, Wolfe, Clay, Magoffin, and Martin counties—all rural counties located in Eastern Kentucky—are among those counties in the nation with the highest rate of children in poverty, ranging from 45.4 percent in Martin County to 56.4 percent in Owsley County. (In the national list of 38 counties with the highest rates of children in poverty, only one—Hidalgo County in Texas—is considered an urban county; the remaining 37 are rural.)

Childhood poverty isn’t always the result of family members not working. In fact, two-thirds of poor families with children in Kentucky have at least one household member who works at least part of the year—10 months per year on average—and nearly 25 percent of them work full-time. Less than 20 percent of poor families with children rely on welfare for the bulk of their income.

Leaving welfare rolls does not necessarily mean that a family with children also leaves poverty. In fact, the statistics indicate that nearly 60 percent of families leaving the welfare rolls continued to live in poverty despite family members’ work.

Sources: the College's Social 'N Agricultural Resource Library (www.ca.uky.edu/snarl), Kentucky Youth Advocates (www.kyyouth.org), and the Children's Defense Fund (www.childrensdefense.org). Visit these Web sites for more information about children in poverty.

    - Listening to the Voices of the Rural Poor

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2002
Research Annual Report

Kentucky Agricultural Experiment Station

In 2002, the Kentucky Agricultural Experiment Station made a giant leap forward in its funding from external grants and contracts for the College of Agriculture. That funding increased 60 percent over 2001— going from $10.5 million to $17.2 million. (The University as a whole increased its external funding by 22 percent.)
That's not the only milestone. Here are others:

  • Between $4 and $5 million of the College's external grants are secured by faculty who have a primary appointment in the Cooperative Extension Service.
    n College faculty obtained ten patents this year: in biotechnology, veterinary immunology, food science, weed science, and insect culture.
  • The year 2002 gave us another chance to discover more about Mare Reproductive Loss Syndrome (MRLS). Based partly on recommendations to protect mares from eastern tent caterpillars, only about one-third as many losses occurred in 2002 as in 2001. This past year, many College scientists again pitched in with enormous dedication and ruled out cyanide and mycotoxins as likely causes. Researchers also successfully reproduced the syndrome using eastern tent caterpillars, a key step in understanding the cause of the disease.
  • A new program that will foster start-up companies in the state is under way. Sponsored by the National Science Foundation, the Natural Products Alliance aims to translate University plant science research into start-up companies producing natural products such as plant-derived pharmaceuticals.

The report of the year 2002 is a sampling of only a few of the 148 externally-funded research projects in the College, but the stories here reflect the range of activities and the level of commitment typical of the Kentucky Agricultural Experiment Station. As you will see, our research program is committed to partnerships, world-class science, and discovering new research tools.
For example, we are partnering with:
Extension—One of the most important partners for the Experiment Station is the Cooperative Extension Service. The high-impact research of faculty members who have a primary appointment in Extension is making a difference in Kentucky.
Other colleges in the University—These relationships bring the best science to bear on solving agricultural problems, and the discoveries they yield are important to the future of Kentucky agriculture. Biosystems and agricultural engineering research, for example, may result in new approaches to using tobacco plants to produce commercially-valuable proteins. West Nile Virus, a complex disease, is being studied by a cross-disciplinary team. That broad approach is necessary if West Nile's devastation is to be understood and eventually curbed. Partners for these projects come from the College of Pharmacy and the College of Arts and Sciences.
Kentucky State University—KSU is a natural partner, since both UK and KSU are land grant universities bent on helping the public. KSU's research on traps for beehive mites illustrates its efforts to replace chemical use with other control methods. Together, UK and KSU serve a broad range of agriculture.
State agencies—Forestry faculty members have worked for the past several years with the Kentucky Department of Fish and Wildlife Resources in an effort to restore the peregrine falcon to its natural rural habitat. That work is an example of collaboration across organizational lines for the state's benefit.

This report also points up two other important aspects of the College's research program:
* Although many of our programs have international distinction, the programs of Jerry Skees and Peter Nagy have attracted worldwide acclaim for innovation and originality.
* We're committed to expanding opportunities for horticultural crops— as you'll see when you read about the creative use of computer scanning to determine seed vigor.

We are proud of what our Experiment Station scientists have done in the past year, and we look forward to the future.

Nancy M. Cox, Associate Director
Kentucky Agricultural Experiment Station
S-129 Agricultural Science Center, University of Kentucky
Lexington, Kentucky 40546-0091
E-mail: ncox@uky.edu


Total Research Support

$51.8 million

2002 Federal Fiscal Year

(October 1, 2001 through September 30, 2002)

Gifts & Endowment Income—$4,313,867

USDA—$5,275,321

State—$24,998,013

Grants & Contracts—$17,200,000

Research Annual Report Stories by Martha Jackson

Managing the Hurricane

Some people expect the worst. Jerry Skees in Agricultural Economics doesn't waste time expecting it. He moves on to how to manage it, traveling the globe to develop agricultural insurance in countries such as Mexico, Morocco, Mongolia, and Argentina.
“What we're trying to do is sort out the mix between markets and government for managing natural disaster risk,” Skees said. “When everyone has a wreck at the same time, it requires special financial arrangements.”

In this case, the “wreck” is generally a hurricane, flood, famine, drought—any devastating weather-related event that affects all parts of a country’s economy.
Skees helps countries figure out how to shift some of the potential economic cost of such disasters into the global financial markets so the economic burden is shared.

“We’re trying to help countries sort out, before the event, how to finance economic losses as well as who is going to get benefits,” he said. He helps countries assess their risk, price it, and recommends how (and who) should bear the cost of those risks.
With the right kind of planning, a country can better survive the disaster's economic pummeling and rebound more quickly with less dependence on the whims of international aid.

“Social scientists rarely have the opportunity to try different approaches in other countries,” Skees said about his international experience. “The hope is that the learning will be something we can bring back to Kentucky and the nation.”

Skees continues to be involved in advising on the U.S. crop insurance program, for which the issue of sharing the risk in a global market is still of great significance.


Moving Over to Better Red Clover

Twelve years ago, most of the red clover seeded in Kentucky was of common (and relatively cheap) varieties. Research showed that some varieties were better, but how to convince farmers? For Jimmy Henning, then an Extension specialist (now assistant director of Extension for agriculture and natural resources), it was a matter of putting the plow horse in the race with the Thoroughbred.

Variety trials were expanded to include common red clovers. Those trials began to show that, by comparison, research-proven varieties improved yield, lived longer, and brought in at least $250 more per acre than did the common varieties.

But Henning knew improved varieties of red clover wouldn’t take hold unless farmers saw them work firsthand. So he and Dan Grigson, Lincoln County agent for ag and natural resources, carried out an information campaign that is a model for how to put research to work. Henning and Grigson conducted demonstrations, held field days, spoke at meetings, and told their story to anybody who would listen—in the media, in newsletters (including Grigson's own Uddergram), and at farm supply stores. They convinced distributors to put better red clover varieties in the stores.

Farmers began asking for improved varieties, and stores began to stock them. The added value due to extra yield and persistence grew from about $3.5 million in 1995 to nearly $7 million in 2002 because of increased use of the better varieties.

Not all farmers in Kentucky (or Lincoln County) are convinced, of course. But the effort shows that research, packaged so that its benefits are clear, can mean more profits for farmers.

Pharming and Foam

Most people still look at a tobacco plant and think of only one product, but College researchers are exploring tobacco's potential to manufacture crucial proteins for the pharmaceutical industry through a new biotechnology called molecular pharming.
Kentucky, a state that wrote the book on how to grow tobacco, is in a prime position to take advantage of a crop that’s being used in new ways.

The tobacco plant is able, with the jump-start of a genetically modified protein introduced into its biological system, to produce proteins that can become the basis for all sorts of medicines.

The next step in this kind of pharming is to harvest these proteins as efficiently and as inexpensively as possible. That's where the engineer comes in. Czarena Crofcheck in Biosystems and Agricultural Engineering is working with colleagues including Michael Jay and Paul M. Bummer in the College of Pharmacy and Indu B. Maiti at the Kentucky Tobacco Research and Development Center on how to best separate and recover these crucial proteins from the hundreds of other proteins produced by tobacco.

These researchers are using a method called foam fractionation. It's based on the scientific principle that if a gas is bubbled through a liquid, foam is created and surface-active components concentrate in the foam. These components can then be removed along with the foam.

Crofcheck and her colleagues have already shown the process works. Now, they are refining the technique. If they are successful, they will lower the cost of producing drugs from tobacco plants and potentially increase the output of tobacco pharmers in Kentucky and elsewhere.

Sleuthing Our Way to Fuel Alternatives

Many hope for a world in which we will be less dependent on non-renewable oil, coal, and natural gas to power our cars and heat our homes. Ethanol made from renewable organic material such as plants may be part of the answer, but right now it's expensive to produce. Two UK researchers could help change that.

Herb Strobel in the College's Department of Animal Sciences and Bert Lynn at the UK Mass Spectrometry Facility are analyzing the bacterium Clostridium thermocellum, which one day could be an efficient ethanol-producing machine. It works quickly at high temperatures to convert organic matter into ethanol. But this bacterium can't itself tolerate much ethanol, and that means it can't produce ethanol beyond a certain amount.

As the first step to understanding how particular proteins contribute to ethanol tolerance, Strobel and Lynn are identifying the proteins in the bacterium using a set of state-of-the-art techniques called proteomics. It's a preface to genetically altering this bacterium's proteins so that it can tolerate (and thus produce) more ethanol.

Their procedure is exacting: Strobel and his colleagues tag the ethanol-sensitive proteins to be studied; Lynn and his staff analyze them at the smallest structural level to identify them precisely.

This research could lead to all sorts of cheap organic matter being used to make ethanol—corn husks, sawdust, wood chips, even municipal waste—and the search for renewable energy sources will have taken a giant step forward.

Using Numbers to Tell the Tale

If Julie Zimmerman had her own bumper sticker, it might read Have Numbers: Will Travel.
That's because Zimmerman, a faculty member in the Department of Community and Leadership Development, is the primary organizer of a database of social and demographic data for every county in the commonwealth.

Called Kentucky: By the Numbers, Zimmerman's program started as a result of federal welfare reform in the late 1990s, when the federal government mandated that states find ways to help welfare recipients make the transition to work.

“People weren't really sure just how the resulting changes would affect their communities. They told us they needed data to help them make decisions,” Zimmerman said.
Zimmerman and her colleagues asked people what types of information they needed to respond to the changes. Since then, she’s assembled a broad range of social and demographic data including, for example, how much of a community's economy depends on food stamps, how many women are in its labor force, and how many farmers live in a county. The material is organized so that it is easy to access and use.

The numbers have been used by a diverse group of people, including researchers and organizational and governmental officials.

“Response continues to be high for this series. Our plans are to continue adding data on issues facing Kentucky communities,” Zimmerman said.
Kentucky: By the Numbers is available through local Extension offices or on the Web at: www.ca.uky.edu/snarl.

West Nile Virus: Where the Sciences Meet

To most of us, West Nile Virus is only a passing worry. To horse farm managers, West Nile is a very real threat. To a group of UK scientists, it is an example of the interconnectedness of nature and an opportunity to work together to combat a complex disease.

Peter Timoney and Tom Chambers in Veterinary Science, David Westneat in UK's Department of Biology, and Stephen Dobson in Entomology are collaborating to better understand West Nile, which was identified in the United States in 1999.

More than one kind of mosquito can carry the virus, and more than 100 species of birds are known to be susceptible to it. A third complication is that, while mosquitoes carrying the virus normally infect birds, some species can bite horses or people instead. The virus can kill birds and cause a range of symptoms in people and horses. Very occasionally, West Nile causes fatal neurological disease.

Dobson is working with livestock managers to obtain mosquito samples that are tested for the virus. Timoney and his colleagues provide information about the horses that fall ill with West Nile, and Westneat is looking at bird species to see which ones make good hosts, and why.

Together with other UK scientists and state and county health departments, they are working to better understand West Nile: its natural cycle, key participants, and risk factors. By better understanding this disease, they hope to provide more focused and effective control strategies that will result in a safer environment for the state's human and equine populations and financial savings for farm managers.

Bringing Back the Peregrine Falcon
The peregrine falcon is a great-winged bird of prey that dive bombs for its food and can almost outstrip a flying plane. It can live anywhere from the tropics to the North Pole, but this bird is hard to find in Kentucky. Mike Lacki in Forestry has been working for the past three years at the Red River Gorge to find out why.

The peregrine has been known lately as more of a city bird. When the Kentucky Department of Fish and Wildlife Resources decided try to re-establish it in a more rural setting, Lacki and his graduate students began to handle bird release, hatching of young in captivity, and data collection.

Peregrines are great migrators. Ours have moved on, but currently, four nesting pairs of peregrines (plus a lone female) are in the state, having migrated here from elsewhere. The College's research project is adding to the knowledge base of how to encourage more peregrines to live and thrive in Kentucky in the future.

Lacki thinks restoration of birds such as the peregrine, which was once on the endangered species list, is important. “If we make no effort to restore what we've already eliminated, we've accepted that natural systems are a little less than what they could be,” he said.
He also believes it matters to bring the peregrine back to places like the Gorge.
“If you're going to truly restore something, you're going to put it where it belongs,” he said.

Using an Electronic Yardstick

The impatiens, petunias, and other flowers you buy at the garden center just naturally grow to the same height, right?

Wrong. If all your seedlings are the same height, it may be because bedding plant growers detected and replaced weak, low-vigor seedlings with strong ones.

The strength of seeds (and their ability to grow rapidly and uniformly) is called seed vigor, and until recently, seed vigor in bedding plants hadn't gotten much attention.
Bob Geneve and his colleagues in Horticulture are changing the way seed producers evaluate seed vigor by using a flat-bed scanner.

This little piece of office equipment is usually used to copy documents into an electronic file, but Geneve is using it to take digital images of seeds as they germinate and the seedlings grow. Directed by a computer program, the scanner takes pictures often, and at scheduled intervals, so it's easier to pinpoint exactly when the seedling first starts to grow, which is an indicator of seed vigor.

The scanner is also able to produce an image that makes it possible to measure growth precisely so that growth comparisons between one seed and another are more accurate.
Using this flat-bed scanner technique to identify high-vigor seeds could mean more money for the bedding plant industry. By using high-vigor seeds, seedling growers could save on labor costs to replace seedlings that don't come up on schedule. Seed companies, if they could show that their seeds have high vigor, would have another selling point in the marketplace.

Finding the Virtue in Viruses

RNA viruses are a wily enemy of agriculture and medicine. They cause disease in plants, animals, and people. Peter Nagy in Plant Pathology is part of a group of researchers around the world looking at how RNA viruses (those with ribonucleic acid as genetic material) work in small plants. If their work is successful, science will have taken a big step in learning how to disarm these viruses before they can do harm.

These viruses are a tough adversary. They can replicate so fast it would be dizzying to watch: 1 million new virus particles can be made from a single cell. “It's one of the most efficient processes on earth,” Nagy said. Sometimes, the viruses accidentally produce defective offspring that steal the parent's proteins. The parent virus can’t reproduce itself without those proteins, and the defective virus can't produce them at all, so replication is curbed. Therefore, these defective viruses are potentially our allies against harmful viruses.
Nagy wants to understand both how the virus can copy itself so quickly and how replication can be blocked, which could mean not only less viral disease for plants but also strides in understanding—and blocking—viral infections in people and animals.

This research has even larger implications. Viruses could be harnessed for 21st century technology: the replication process of RNA viruses, once they are separated from their own harmful effects, could be used to turn plants into efficient little factories for medicines and other products.

Help for the Honeybee

Honeybees not only make tasty golden nectar, they scurry from plant to plant with the pollen essential to growing a variety of crops from apples to almonds.

For years, honeybee hives have been beset by the Varroa mite. This little vampire of a bug attaches itself to the bees, sucks their blood, weakens them, and shortens their life-span. Occasionally the mites fall off, but they just crawl back on the bees and continue their dirty work.

Acaricides—insecticides for mites—have been the tool of choice in the past, but Tom Webster, an entomologist at Kentucky State University, is one of several people nationwide studying an inexpensive, non-chemical alternative.

The method under study is remarkably simple: A screen with about eight holes per inch is inserted in the hive. When the mites attach themselves as usual to the bees and fall off, they plummet through the screen trap. Unable to climb out to re-attach themselves to the bees, the mites die.

Webster and his research assistants at Kentucky State have carried out the first long-term project using the traps and have found, over 15 months, that they reduce mites by 60 percent.

He estimates that, nationwide, the traps could save $12 to $24 million in acaricides (even more if you add in the cost of labor to apply them).
The traps are already on the market. They cost about $10 retail.

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