1: Pogany J, Fabian MR, White KA, Nagy PD. A replication silencer element in a plus-strand RNA virus. EMBO J. 2003 Oct15;22(20): 5602-11.
2: Panavas T, Nagy PD. Yeast as a model host to study replication and recombination of defectiveinterfering RNA of Tomato bushy stunt virus.Virology. 2003 Sep 15;314(1):315-25.
3: Rajendran KS, Nagy PD. Characterization of the RNA-binding domains in the replicase proteins of tomatobushy stunt virus. J Virol. 2003 Sep;77(17):9244-58.
4: Panavas T, Panaviene Z, Pogany J, Nagy PD. Enhancement of RNA synthesis by promoter duplication in tombusviruses. Virology. 2003 May 25;310(1):118-29.
5: Panaviene Z, Baker JM, Nagy PD. The overlapping RNA-binding domains of p33 and p92 replicase proteins are essential for tombusvirus replication. Virology. 2003 Mar 30;308(1):191-205.
6: Panavas T, Nagy PD. The RNA replication enhancer element of tombusviruses contains two interchangeable hairpins that are functional during plus-strand synthesis. J Virol. 2003 Jan;77(1):258-69.
7: Cheng CP, Pogany J, Nagy PD. Mechanism of DI RNA formation in tombusviruses: dissecting the requirement for primer extension by the tombusvirus RNA dependent RNA polymerase in vitro. Virology. 2002 Dec 20;304(2): 460-73.
8: Panavas T, Pogany J, Nagy PD. Internal initiation by the cucumber necrosis virus RNA-dependent RNA polymerase is facilitated by promoter-like sequences. Virology.2002 May 10;296(2):275-87.
9: Panavas T, Pogany J, Nagy PD. Analysis of minimal promoter sequences for plus-strand synthesis by the Cucumber necrosis virus RNA-dependent RNA polymerase. Virology. 2002 May 10;296(2):263-74.
10: Rajendran KS, Pogany J, Nagy PD. Comparison of turnip crinkle virus RNA-dependent RNA polymerase preparations expressed in Escherichia coli or derived from infected plants J Virol. 2002 Feb;76(4):1707-17.
11: Nagy PD, Pogany J, Simon AE. In vivo and in vitro characterization of an RNA replication enhancer in a satellite RNA associated with turnip crinkle virus. Virology. 2001 Sep 30;288(2): 315-24.
12: Nagy PD, Pogany J. Partial purification and characterization of Cucumber necrosis virus and Tomato bushy stunt virus RNA-dependent RNA polymerases: similarities and differences in template usage between tombusvirus and carmovirus RNA-dependent RNA polymerases. Virology. 2000 Oct 25;276(2):279-88.
13: Yoshinari S, Nagy PD, Simon AE, Dreher TW. CCA initiation boxes without unique promoter elements support in vitro transcription by three viral RNA-dependent RNA polymerases. RNA. 2000 May;6(5):698-707.
14: Nagy PD, Pogany J, Simon AE. RNA elements required for RNA recombination function as replication enhancers in vitro and in vivo in a plus-strand RNA virus. EMBO J. 1999 Oct 15;18(20):5653-65.
15: Nagy PD, Ogiela C, Bujarski JJ. Mapping sequences active in homologous RNA recombination in brome mosaic virus:prediction of recombination hot spots. Virology. 1999 Feb 1;254 (1):92-104.
16: Figlerowicz M, Nagy PD, Tang N, Kao CC, Bujarski JJ. Mutations in the N terminus of the brome mosaic virus polymerase affect geneticRNA-RNA recombination. J Virol. 1998 Nov;72(11):9192-200.
17: Nagy PD, Simon AE. In vitro characterization of late steps of RNA recombination in turnip crinkle virus.II. The role of the priming stem and flanking sequences. Virology. 1998 Sep 30;249(2):393-405.
18: Nagy PD, Simon AE. In vitro characterization of late steps of RNA recombination in turnip crinkle virus. I. Role of motif1-hairpin structure. Virology. 1998 Sep 30;249(2):379-92.
19: Nagy PD, Zhang C, Simon AE. Dissecting RNA recombination in vitro: role of RNA sequences and the viral replicase. EMBO J. 1998 Apr 15;17(8):2392-403.
20: Nagy PD, Bujarski JJ. Silencing homologous RNA recombination hot spots with GC-rich sequences in brome mosaic virus. J Virol. 1998 Feb;72(2):1122-30.
21: Nagy PD, Simon AE. New insights into the mechanisms of RNA recombination. Virology. 1997 Aug 18;235(1):1-9. Review.
22: Nagy PD, Bujarski JJ. Engineering of homologous recombination hotspots with AU-rich sequences in brome mosaic virus. J Virol. 1997 May;71(5):3799-810.
23: Figlerowicz M, Nagy PD, Bujarski JJ. A mutation in the putative RNA polymerase gene inhibits nonhomologous, but not homologous, genetic recombination in an RNA virus. Proc Natl Acad Sci U S A. 1997 Mar 4;94(5):2073-8.
24: Nagy PD, Carpenter CD, Simon AE. A novel 3'-end repair mechanism in an RNA virus. Proc Natl Acad Sci U S A. 1997 Feb 18;94(4):1113-8. Erratum in: Proc Natl Acad Sci U S A 1997 May 27;94(11):5980-2.
25: Nagy PD, Bujarski JJ. Homologous RNA recombination in brome mosaic virus: AU-rich sequences decrease the accuracy of crossovers. J Virol. 1996 Jan;70(1):415-26.
26: Nagy PD, Dzianott A, Ahlquist P, Bujarski JJ. Mutations in the helicase-like domain of protein 1a alter the sites of RNA-RNA recombination in brome mosaic virus. J Virol. 1995 Apr;69(4):2547-56.
27: Nagy PD, Bujarski JJ. Efficient system of homologous RNA recombination in brome mosaic virus:sequence and structure requirements and accuracy of crossovers. J Virol. 1995 Jan;69(1):131-40.
28: Pogany J, Huang Q, Romero J, Nagy PD, Bujarski JJ. Infectious transcripts from PCR-amplified broad bean mottle bromovirus cDNA clones and variable nature of leader regions in RNA 3 segment. J Gen Virol. 1994 Mar;75 ( Pt 3):693-7.
29: Bujarski JJ, Nagy PD, Flasinski S. Molecular studies of genetic RNA-RNA recombination in brome mosaic virus. Adv Virus Res. 1994;43:275-302. Review. No abstract available.
30: Bujarski JJ, Nagy PD. Targeting of the site of nonhomologous genetic recombination in brome mosaic virus. Arch Virol Suppl. 1994;9:231-8.
31: Nagy PD, Bujarski JJ. Targeting the site of RNA-RNA recombination in brome mosaic virus with antisense sequences. Proc Natl Acad Sci U S A. 1993 Jul 15;90(14):6390-4.
32: Nagy PD, Bujarski JJ. Genetic recombination in brome mosaic virus: effect of sequence and replication of RNA on accumulation of recombinants. J Virol. 1992 Nov;66(11):6824-8.
33: Burgyan J, Nagy PD, Russo M. Synthesis of infectious RNA from full-length cloned cDNA to RNA of cymbidium ringspot tombusvirus. J Gen Virol. 1990 Aug;71(Pt 8):1857-60.
34: Nagy PD, Gaborjanyi R, Kovacs L, Farkas I. Antiviral activity of tiazofurine against barley stripe mosaic virus. Antiviral Res. 1989 Feb;11(1):41-5.
