Recent Publications

2010

Books and Book Chapters

Goodin, M., K. Martin, and K. Kopperud.  Bimolecular fluorescence complementation: Simultaneous determination of protein interaction and localization in plant cells. Pp. 153-166. IN: A. Wang, ed. Principles and Practice of Advanced Technology in Plant Virology.  Research Signpost, Kerala, India.

Schardl, C.L., and F. Chen.  Plant defences against herbivore attack. IN: Encyclopedia of Life Sciences 2010. John Wiley & Sons, Ltd., Chichester, Great Britain.  Published online: doi:10.1002/9780470015902.a0001324.pub2.

Seebold, K.W., and F.J. Louwes.  Relative effectiveness of alternative management practices for disease control in pepper.  P. 214. IN: J. Kemble, ed.  2010 Vegetable Crop Handbook for the Southeastern U.S. North Carolina Vegetable Growers Association, Raleigh, NC.

Vincelli, P. Technology transfer in Extension: Experience in the United States of America. Pp. 55-58. IN: N. Hardwick and M.L. Gullino, ed. Knowledge And Technology Transfer for Plant Pathology. Springer, Dordrecht, The Netherlands.

Refereed Journal Articles

Arnaoudova, E., D.C. Haws, P. Huggins, J.W. Jaromczyk, N. Moore, C.L. Schardl, and R. Yoshida.  Statistical phylogenetic tree analysis using differences of means. Frontiers in Neuroscience 4:47 (12pp). Published online: doi:10.3389/fnins.2010.00047.

Bandyopadhyay, A., K. Kopperud, G. Anderson, K. Martin, and M. Goodin.  An integrated protein localization and interaction map for Potato yellow dwarf virus, type species of the genus Nucleorhabdovirus. Virology 402:61-71.

Bradley, C.A., T.W. Allen, A.E. Dorrance, W.J. Dunphy, L.J. Giesler, D.E. Hershman, C.A. Hollier, V. Horn, and J.A. Wrather.  Evaluation of the soybean rust Pest Information Platform for Extension and Education (PIPE) public website’s impact on certified crop advisers. Plant Health Progress.  Published online: doi: 10.1094/PHP-2010-0701-01-RS.

Barajas, D., and P.D. Nagy.  Ubiquitination of tombusvirus p33 replication protein plays a role in virus replication and binding to the host Vps23p ESCRT protein. Virology 397:358-368.

Buiate, E.A.S., E.A. de Souza, L. Vaillancourt, I. Resende, and U.P. Klink.  Evaluation of resistance in sorghum genotypes to the causal agent of anthracnose.  Crop Breeding and Applied Biotechnology 10:166-172.

deSá, P.B., W.M. Havens, and S.A. Ghabrial.  Characterization of a novel broad-spectrum antifungal protein from virus-infected Helminthosporium (Cochliobolus) victoriae.  Phytopathology 100:880-889.

deSá, P.B., H. Li, W.M. Havens, M.L. Farman, and S.A. Ghabrial.  Overexpression of the victoriocin gene in Helminthosporium (Cochliobolus) victoriae enhances the antifungal activity of culture filtrates.  Phytopathology 100:890-896.

Eaton, C.J., M.P. Cox, B. Ambrose, M. Becker, U. Hesse, C.L. Schardl, and B. Scott.  Disruption of signaling in a fungal-grass symbiosis leads to pathogenesis.  Plant Physiology 153:1780-1794.

Hartman, J., E. Dixon, and S. Bernick.  Evaluation of therapeutic treatments to manage oak bacterial leaf scorch.  Arboriculture & Urban Forestry 36: 140-146.

Jaag, H.M., and P.D. Nagy.  The combined effect of environmental and host factors on the emergence of viral RNA recombinants. PLoS Pathogens 6:e1001156.  Published online: doi: 10.1371/journal.ppat.1001156.

Jaag, H.M., J. Pogany, and P.D. Nagy.  A host Ca2+/Mn2+ ion pump is a factor in the emergence of viral RNA recombinants.  Cell Host & Microbe 7:74-81.

Jeong, R.-D., A.C. Chandra-Shekara, S.R. Barman, D.A. Navarre, D. Klessig, A. Kachroo, and P. Kachroo.  Cryptochrome 2 and phototropin 2 regulate resistance protein-mediated viral defense by negatively regulating an E3 ubiquitin ligase.  Proceedings of the National Academy of Sciences USA 107:13538-13543.

Jeong, R.-D., A. Kachroo, and P. Kachroo.  Blue light photoreceptors are required for the stability and function of a resistance protein mediating viral defense in Arabidopsis.  Plant Signaling and Behavior 5:1504-1509.

Jiang, Y., C.-P. Cheng, E. Serviene, N. Shapka, and P.D. Nagy.  Repair of lost 5’ terminal sequences in tombusviruses: Rapid recovery of promoter and enhancer-like sequences in recombinant RNAs.  Virology 404:96-105.

Jiang, Y., Z. Li, and P.D. Nagy.  Nucleolin/Nsr1p binds to the 3’ noncoding region of the tombusvirus RNA and inhibits replication.  Virology 396:10-20.

Kang, H.-G., C.-K. Oh, M. Sato, F. Katagiri, J. Glazebrook, H. Takahashi, P. Kachroo, G. Martin, and D. Klessig.  Endosome-associated CRT1 functions early in Resistance gene-mediated signaling in Arabidopsis and tobacco.  Plant Cell 22:918-936.

Kumudini, S., C.V. Godoy, B. Kennedy, E. Prior, J. Omielan, H.R. Boerma, and D. Hershman.  Role of host-plant resistance and disease development stage on leaf photosynthetic competence of soybean rust infected leaves.  Crop Science 50:2533-2542.

Li, Z., J. Pogany, S. Tupman, A.M. Esposito, T.G. Kinzy, and P.D. Nagy.  Translation elongation factor 1A facilitates the assembly of the tombusvirus replicase complex and stimulates minus-strand synthesis.  PLoS Pathogens 6:e1001175.  Published online: doi: 10.1371/journal.ppat.1001175.

Liu, H., Y. Fu, D. Jiang, G. Li, J. Xie, J. Cheng, Y. Peng, S.A. Ghabrial, and X. Yi.  Widespread horizontal gene transfer from double-stranded RNA viruses to eukaryotic nuclear genome.  Journal of Virology 84:11876-11887.

Luque, D., J.M. González, D. Garriga, S.A. Ghabrial, W.M. Havens, B. Trus, N. Verdaguer, J.L. Carrascosa, and J.R. Castón.  The T=1 capsid protein of Penicilliumchrysogenumvirus is formed by a repeated helix-rich core indicative of gene duplication.  Journal of Virology 84:7256-7266.

McDonald, M., A. Kendall, W. Bian, I. McCullough, E. Lio, W.M. Havens, S.A. Ghabrial, and G. Stubbs.  Architecture of the potyviruses.  Virology 405:309-313.

Mendu, V., M. Chiu, D. Barajas, Z. Li, and P.D. Nagy.  Cpr1 cyclophilin and Ess1 parvulin prolyl isomerases interact with the tombusvirus replication protein and inhibit viral replication in yeast model host.  Virology 406:342-351.

Min, B.-E., K. Martin, R. Wang, P. Tafelmeyer, M. Bridges, and M. Goodin.  A host-factor interaction and localization map for plant-adapted rhabdovirus implicates cytoplasm-tethered transcription activators in cell-to-cell movement.  Molecular Plant-Microbe Interactions 23:1420-1432.

Nagy, P.D., and J. Pogany.  Global genomics and proteomics approaches to identify host factors as targets to induce resistance against Tomato bushy stunt virus.  Advances in Virus Research 76:123-177.

Paul, P.A., M.P. McMullen, D.E. Hershman, and L.V. Madden.  Meta-analysis of the effects of triazole-based fungicides on wheat yield and test weight as influenced by Fusarium head blight intensity.  Phytopathology 100:160-171.

Pogany, J., T. Panavas, E. Serviene, M.S. Nawaz-Ul-Rehman, and P.D. Nagy.  A high-throughput approach for studying virus replication in yeast.  Current Protocols in Microbiology 19:16J.1.1-16J.1.15.  Published online: doi: 10.1002/9780471729259.

Sasvari, Z., and P.D. Nagy.  Making of viral replication organelles by remodeling interior membranes.  Viruses 2:2436-2442.

Schwartz, S.L., and M.L. Farman.  Systematic overrepresentation of DNA ends and underrepresentation of DNA termini among sequencing templates prepared from hydrodynamically sheared DNA molecules.  BMC Genomics 11:87.  Published online: doi: 10.1186/1471-2164-11-87.

Selote, D., and A. Kachroo.  RPG1-B-derived resistance to AvrB-expressing Pseudomonas syringae requires RIN4-like proteins in soybean.  Plant Physiology 153:1199-1211.

Selote, D., and A. Kachroo.  Structurally conserved RIN4-like proteins mediate pathogen effector perception in diverse plants.  Plant Signaling and Behavior 5:1453-1456.

Sharma, B., S. Nokes, M. Montross, and L. Vaillancourt.  A real-time polymerase chain reaction protocol for quantifying growth of Fusarium graminearum during solid substrate cultivation on corn stover.  Journal of Biotech Research 2:144-155.

Sharma, M., Z. Sasvari, and P.D. Nagy.  Inhibition of sterol biosynthesis reduces tombusvirus replication in yeast and plants.  Journal of Virology 84:2270-2281.

Soria-Guerra, R.E., S. Rosales-Mendoza, S. Chang, J.S. Haudenshield, P. Annamalai, S. Rodriguez-Zas, G.L. Hartman, S.A. Ghabrial, and S.S. Korban.  Transcriptome analysis of resistant and susceptible genotypes of Glycinetomentella during Phakopsora pachyrhizi infection reveals novel rust resistance genes.  Theoretical and Applied Genetics 120:1315-1333.

Soria-Guerra, R.E., S. Rosales-Mendoz, S. Chang, J.S. Haudenshield, S.S. Rao, G.L. Hartman, S.A. Ghabrial, and S.S. Korban.  Identifying differentially expressed genes in leaves of Glycinetomentella in the presence of the fungal pathogen Phakopsora pachyrhizi.  Planta 232:1181-1189.

Stajich, J.E., S.K. Wilke, D. Ahrén, C.H. Au, B.W. Birren, M. Borodovsky, C. Burns, B. Canbäck, L.A. Casselton, C.K. Cheng, J. Deng, F.S. Dietrich, D.C. Fargo, M.L. Farman, A.C. Gathman, J. Goldberg, R. Guigó, P.J. Hoegger, J.B. Hooker, A. Huggins, T.Y. James, T. Kamada, S. Kilaru, C. Kodira, U. Kües, D. Kupfer, H.S. Kwan, A. Lomsadze, W. Li, W.W. Lilly, L.-J. Ma, A.J. Mackey, G. Manning, F. Martin, H. Muraguchi, D.O. Natvig, H. Palmerini, M.A. Ramesh, C.J. Rehmeyer, B.A. Roe, N. Shenoy, M. Stanke, V. Ter-Hovhannisyan, A. Tunlid, R. Velagapudi, T.J. Vision, Q. Zeng, M.E. Zolan, and P.J. Pukkila.  Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus).  Proceedings of the National Academy of Sciences USA 107:11889-11894.

Tang, J., W.F. Ochoa, H. Li, W.M. Havens, M.L. Nibert, S.A. Ghabrial, and T.S. Baker.  Structure of Fusariumpoae virus 1 shows conserved and variable elements of partitiviruscapsids and evolutionary relationships to picobirnavirus.  Journal of Structural Biology 172:363-371.

Tang, J., J. Pan, W.M. Havens, W.F. Ochoa, T.S.Y. Guu, S.A. Ghabrial, M.L. Nibert, Y.J. Tao, and T.S. Baker.  Backbone trace of partitiviruscapsid protein from electron cryomicroschopy and homology modeling.  Biophysical Journal 99:685-694.

Van Regenmortel, M.H., D.S. Burke, C.H. Calisher, R.G. Dietzgen, C.M. Fauquet, S.A. Ghabrial, P.B. Jahrling, K.M. Johnson, M.R. Holbrook, M.C. Horzinek, G.M. Keil, J.H. Kuhn, B.W. Mahy, G.P. Martelli, C. Pringle, E.P. Rybicki, T. Skern, R.B. Tesh, V. Wahl-Jensen, P.J. Walker, and S.C. Weaver.  A proposal to change existing virus species names to non-Latinized binomials.  Archives of Virology 155:1909-19019.

Wu, M., L. Zhang, G. Li., D. Jiang, and S.A. Ghabrial.  Genome characterization of a debilitation-associated mitovirus infecting the phytopathogenic fungus Botrytis cinerea.  Virology 406:117-126.

Xia, Y., K. Yu, D.A. Navarre, K. Seebold, A. Kachroo, and P. Kachroo.  The glabra1 mutation affects cuticle formation and plant responses to microbes.  Plant Physiology 154:833-846.

Yu, X., B. Li, Y. Fu, D. Jiang, S.A. Ghabrial, G. Li, Y. Peng, J. Xie, J. Cheng, J. Huang, and X. Yi.  A geminivirus-related DNA mycovirus that confers hypovirulence to a plant pathogenic fungus.  Proceedings of the National Academy of Sciences USA 107:8387-8392.

Zhang, D.-X., P. Nagabhyru, J.D. Blakenship, and C.L. Schardl.  Are loline alkaloid levels regulated in grass endophytes by gene expression or substrate availability?  Plant Signaling and Behavior 5:1419-1422.

Other Research Publications

Hershman, D.E.  New soybean rust yield loss prediction tool now available.  MidAmerica Farmer Grower, Issue 40.  Published online: http://www.mafg.net/Articles.aspx?ArticleID=NzI5OQ%3d%3d-EuK98dcfrPM%3d.

Hershman, D.E., and D. Johnson.  Barley yellow dwarf could cause serious yield loss.  MidAmerica Farmer Grower, Issue 37.  Published online: http://www.mafg.net/Articles.aspx?ArticleID=NzA5NA%3d%3d-D3LE9bwgMHU%3d.

Hershman, D., B. Kennedy and T. Yielding.  Effect of fungicide and host resistance on foliar and head diseases of three winter wheat cultivars in Kentucky, 2009.  Plant Disease Management Reports 4:CF033.  Published online: doi: 10.1094/PDMR04.

Hershman, D., B. Kennedy, and T. Yielding.  Evaluation of fungicides for control of foliar and head diseases of winter wheat in Kentucky, 2009.  Plant Disease Management Reports, 4:CF035.  Published online: doi: 10.1094/PDMR04.

Hershman, D., B. Kennedy and T. Yielding.  Evaluation of selected fungicides for control of foliar diseases of soybean in Kentucky, 2009.  Plant Disease Management Reports 4:FC068.  Published online: doi: 10.1094/PDMR04.

Hershman, D., B. Kennedy, and T. Yielding.  Fungicidal control of foliar and head diseases of winter wheat in Kentucky, 2009.  Plant Disease Management Reports, 4:CF036.  Published online: doi: 10.1094/PDMR04.

Hershman, D., B. Kennedy, T. Yielding, P. Bachi, C. Laurent and G. Kelley.  Host resistance and seed treatments for management of soybean cyst nematode in Hopkins County, Kentucky, 2009.  Plant Disease Management Reports 4:N029.  Published online: doi: 10.1094/PDMR04.

Hershman, D., B. Kennedy, T. Yielding, and J.N. Mundell.  Effect of fungicide and times of application on foliar and head diseases of winter wheat in Kentucky, 2009.  Plant Disease Management Reports 4:CF034.  Published online: doi: 10.1094/PDMR04.

Lee, C., and P. Vincelli. Evaluation of fungicide application on disease intensity and yield in field corn, 2009. Plant Disease Management Reports 4:FC020. Published online: doi: 10.1094/PDMR04.

Lee, C., and P. Vincelli. Evaluation of fungicide application on yield in field corn, 2008. Plant Disease Management Reports 4:FC019. Published online: doi: 10.1094/PDMR04.

Seebold, K.W.  Getting ahead of blue mold on burley tobacco. Pp. 16-17.  IN: Tobacco Trends.  Pam Golden, ed. Farm Progress, St. Charles, IL.

Seebold, K.W., and G.W. Carter.  Application of Quadris at different timings for control of target spot on burley tobacco, 2009.  Plant Disease Management Reports 4:FC064.  Published online: doi: 10.1094/PDMR04.

Seebold, K.W., and J.A. Henderson.  Evaluation of Quadris at different timings for control of target spot on burley tobacco, 2009.  Plant Disease Management Reports 3:FC065. Published online: doi: 10.1094/PDMR04.

Vincelli, P., E. Dixon, D. Williams, and P. Burrus.  Efficacy of fungicides for control of brown patch of creeping bentgrass on a sand-based green, 2009. Plant Disease Management Reports 4:T030. Published online: doi: 10.1094/PDMR04.

Vincelli, P., E. Dixon, D. Williams, and P. Burrus. Efficacy of fungicides for control of dollar spot in a mixed creeping bentgrass/Poa annua soil-based green, 2009. Plant Disease Management Reports 4:T028. Published online: doi: 10.1094/PDMR04.

Vincelli, P., E. Dixon, D. Williams, and P. Burrus.  Efficacy of fungicides for control of dollar spot of creeping bentgrass on a sand-based green, 2009. Plant Disease Management Reports 4:T029. Published online: doi: 10.1094/PDMR04.

Vincelli, P., E. Dixon, D. Williams, and P. Burrus. Influence of fungicide spray programs on turf quality in a mixed creeping bentgrass/Poa annua soil-based green, 2009. Plant Disease Management Reports 4:T027. Published online: doi: 10.1094/PDMR04.

Vincelli, P., C. Lee, and R. Bessin.  Gray leaf spot activity in corn.  MidAmerica Farmer Grower, Issue 29.  Published online: http://www.mafg.net/Articles.aspx?ArticleID=NjU2Ng%3d%3d-cJ2MpB%2bLavA%3d.

Vincelli, P., C. Lee, and R. Bessin.  Sampling for corn nematodes.  MidAmerica Farmer Grower,  Issue 20.  Published online:
http://www.mafg.net/Articles.aspx?ArticleID=NTkzMw%3d%3d-BBJHxbO%2bYd0%3d.

Vincelli, P., C. Lee, and R. Bessin.  Scout for lodging potential.  MidAmerica Farmer Grower, Issue 39.  Published online: http://www.mafg.net/Articles.aspx?ArticleID=NzIzMg%3d%3d-iElBViVlrB4%3d.

Vincelli, P., C. Lee, and R. Bessin.  Some unusual kernel injuries.  MidAmerica Farmer Grower, Issue 33.  Published online: http://www.mafg.net/Articles.aspx?ArticleID=NjgxOA%3d%3d-PDItLbuTAr0%3d.

Vincelli, P., C. Lee, and R. Bessin.  Status of southern corn rust in Kentucky.  MidAmerica Farmer Grower, Issue 27.  Published online: http://www.mafg.net/Articles.aspx?ArticleID=NjQxOA%3d%3d-70Jj3JmM%2bnM%3d.

Vincelli, P., and S. McNeil.  High temps, drought are causes of aflatoxins in corn.  MidAmerica Farmer Grower, Issue 44.  Published online: http://www.mafg.net/Articles.aspx?ArticleID=NzUzNg%3d%3d-XspxvYHAzv0%3d.